History

1.2.3 (2023-06-02)

• Fixed imports in our fork of pyvenn

1.2.2 (2023-06-01)

• Fixed broken Pyvenn dependency

1.2.1 (2023-05-09)

• Update PyVCF to PyVCF3

1.2.0 (2019-04-04)

• Fix defect in narrow command wrongly printing ALT=. when GT=.
• Add the count command to count samples, positions, calls, snps, indels, other variants, filtered calls, missing calls, and filter reasons.
• Add the plot command to plot calls along the length of the genome and show the location of filtered calls.
• Change the text of the compare report to refer to “Calls”, not “Sample snps”.
• Drop support for Python 3.4, which is not supported by matplotlib.
• Add support for Python 3.7.

1.1.1 (2019-03-26)

• Replace None with ‘.’ when printing call data.
• Support VCF files with multiple alternate alleles per position.

1.1.0 (2019-02-06)

• Support reading gzip compressed vcf files.

1.0.0 (2018-11-20)

• First public release.